STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEJ68432.1OstA-like protein. (535 aa)    
Predicted Functional Partners:
SEJ68393.1
Beta-barrel assembly machine subunit BamD.
 
  
 0.831
SEJ64766.1
Cell surface protein SprA.
  
     0.743
SEI55548.1
Outer membrane protein assembly factor BamA.
  
  
 0.737
SEI94704.1
Tetratricopeptide repeat-containing protein.
 
   
 0.729
SEI98847.1
Hypothetical protein.
  
    0.724
SEI94688.1
Hypothetical protein; Manually curated.
  
     0.714
SEJ68380.1
RNA polymerase Rpb6.
 
     0.710
SEJ09055.1
Tetratricopeptide repeat-containing protein.
 
   
 0.709
SEJ54126.1
Cell division protein FtsQ.
  
     0.703
SEI77204.1
Tetratricopeptide repeat-containing protein.
  
    0.678
Your Current Organism:
Dyadobacter koreensis
NCBI taxonomy Id: 408657
Other names: D. koreensis, DSM 19938, Dyadobacter koreensis Baik et al. 2007, Dyadobacter sp. WPCB159, KCTC 12537, NBRC 101116, strain WPCB159
Server load: low (26%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.