STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC104210635Transcription repressor MYB6-like. (322 aa)    
Predicted Functional Partners:
LOC104249876
Kinetochore protein NDC80 homolog isoform X1.
   
  
 0.538
LOC104219608
Non-specific serine/threonine protein kinase.
      
 0.482
LOC104246081
Probable boron transporter 2.
      
 0.482
LOC104247168
NAC domain-containing protein 7-like.
      
 0.473
LOC104230239
Cellulose synthase; Belongs to the glycosyltransferase 2 family. Plant cellulose synthase subfamily.
   
  
 0.457
LOC104218210
Cellulose synthase; Belongs to the glycosyltransferase 2 family. Plant cellulose synthase subfamily.
   
  
 0.443
LOC104223973
NAC domain-containing protein 8-like.
   
  
 0.437
LOC104227156
Cellulose synthase; Belongs to the glycosyltransferase 2 family. Plant cellulose synthase subfamily.
   
  
 0.437
LOC104243863
NAC domain-containing protein 8-like.
   
  
 0.437
LOC104220586
Exocyst complex component EXO84B.
      
 0.436
Your Current Organism:
Nicotiana sylvestris
NCBI taxonomy Id: 4096
Other names: N. sylvestris, Nicotiana sylvestris Speg. & Comes, wood tobacco
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