STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC104215100Transcription factor CYCLOIDEA-like isoform X1. (337 aa)    
Predicted Functional Partners:
LOC104229175
Transcription factor TCP19-like.
  
   
 0.527
LOC104230657
Putative F-box protein PP2-B12 isoform X1.
  
     0.518
LOC104234168
Protein SHI RELATED SEQUENCE 1-like isoform X1.
  
     0.514
LOC104245577
F-box protein At2g02240-like isoform X1.
  
     0.512
LOC104237348
OBERON-like protein; Probable transcription factor.
  
     0.511
LOC104249063
Protein SHI RELATED SEQUENCE 5-like isoform X1.
  
     0.507
LOC104247355
Probable methyltransferase PMT28.
  
     0.504
LOC104243004
Protein LATERAL ROOT PRIMORDIUM 1.
  
     0.496
LOC104246426
Transcription factor TCP9-like.
  
   
 0.496
LOC104232586
Protein SHI RELATED SEQUENCE 5-like isoform X1.
  
     0.495
Your Current Organism:
Nicotiana sylvestris
NCBI taxonomy Id: 4096
Other names: N. sylvestris, Nicotiana sylvestris Speg. & Comes, wood tobacco
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.