STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC104215225Lysine--tRNA ligase. (598 aa)    
Predicted Functional Partners:
LOC104228703
Probable methionine--tRNA ligase; Belongs to the class-I aminoacyl-tRNA synthetase family.
  
 0.982
LOC104234851
Probable methionine--tRNA ligase.
  
 0.982
LOC104243638
Probable methionine--tRNA ligase; Belongs to the class-I aminoacyl-tRNA synthetase family.
  
 0.982
LOC104240944
Probable glutamate--tRNA ligase, cytoplasmic; Belongs to the class-I aminoacyl-tRNA synthetase family.
  
 0.888
LOC104244261
glutamine--tRNA ligase; Belongs to the class-I aminoacyl-tRNA synthetase family.
  
 0.887
LOC104211948
Probable isoleucine--tRNA ligase, cytoplasmic; Belongs to the class-I aminoacyl-tRNA synthetase family.
  
 0.884
atpA
ATP synthase subunit alpha, chloroplastic; Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit. Belongs to the ATPase alpha/beta chains family.
  
  
 0.856
LOC104232788
leucine--tRNA ligase, cytoplasmic-like; Belongs to the class-I aminoacyl-tRNA synthetase family.
  
 0.855
LOC104242918
glutamate--tRNA ligase, chloroplastic/mitochondrial; Belongs to the class-I aminoacyl-tRNA synthetase family.
  
 0.837
LOC104228994
Probable isoleucine--tRNA ligase, mitochondrial isoform X1; Belongs to the class-I aminoacyl-tRNA synthetase family.
  
 0.835
Your Current Organism:
Nicotiana sylvestris
NCBI taxonomy Id: 4096
Other names: N. sylvestris, Nicotiana sylvestris Speg. & Comes, wood tobacco
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