STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC104215454Casein kinase I-like; Belongs to the protein kinase superfamily. (422 aa)    
Predicted Functional Partners:
LOC104244081
Protein LTV1 homolog isoform X1.
    
 0.812
LOC104245165
Bystin isoform X1.
    
 0.735
LOC104223325
Serine/threonine-protein kinase rio2.
    
 0.732
LOC104228267
RNA-binding protein NOB1.
    
 0.628
LOC104221905
Uncharacterized protein LOC104221905.
    
 0.571
LOC104229370
pre-rRNA-processing protein TSR1 homolog.
    
 0.571
LOC104241346
RNA-binding protein pno1.
    
 0.563
LOC104211118
Serine/threonine-protein kinase RIO1; Belongs to the protein kinase superfamily. RIO-type Ser/Thr kinase family.
    
 0.518
LOC104225957
Histone deacetylase 6.
      
 0.497
LOC104229107
Uncharacterized protein LOC104229107.
   
 
  0.492
Your Current Organism:
Nicotiana sylvestris
NCBI taxonomy Id: 4096
Other names: N. sylvestris, Nicotiana sylvestris Speg. & Comes, wood tobacco
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.