STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC104212020Protein vip1. (245 aa)    
Predicted Functional Partners:
LOC104247781
Ubiquitin-activating enzyme E1 1 isoform X1; Belongs to the ubiquitin-activating E1 family.
      
 0.555
LOC104249942
Ubiquitin-activating enzyme E1 1-like; Belongs to the ubiquitin-activating E1 family.
      
 0.553
LOC104234309
COP9 signalosome complex subunit 5b-like.
    
 
 0.503
LOC104215120
Cell division control protein 2 homolog C; Belongs to the protein kinase superfamily.
    
 
 0.455
LOC104223168
Cell division control protein 2 homolog D-like isoform X1; Belongs to the protein kinase superfamily.
    
 
 0.455
LOC104244816
Cell division control protein 2 homolog D; Belongs to the protein kinase superfamily.
    
 
 0.455
LOC104231995
tRNA (guanine(37)-N1)-methyltransferase; Specifically methylates the N1 position of guanosine-37 in various cytoplasmic and mitochondrial tRNAs. Methylation is not dependent on the nature of the nucleoside 5' of the target nucleoside. This is the first step in the biosynthesis of wybutosine (yW), a modified base adjacent to the anticodon of tRNAs and required for accurate decoding; Belongs to the TRM5 / TYW2 family.
      
 0.422
LOC104222253
Uncharacterized protein At2g39795, mitochondrial-like.
      
 0.412
LOC104247047
WD repeat-containing protein 55.
      
 0.407
Your Current Organism:
Nicotiana sylvestris
NCBI taxonomy Id: 4096
Other names: N. sylvestris, Nicotiana sylvestris Speg. & Comes, wood tobacco
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