STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC104212029Putative pentatricopeptide repeat-containing protein At5g06400, mitochondrial. (1046 aa)    
Predicted Functional Partners:
LOC104243467
Uncharacterized protein LOC104243467.
  
     0.517
LOC104237220
Uncharacterized protein LOC104237220 isoform X1.
  
     0.504
LOC104221147
Uncharacterized protein LOC104221147.
  
     0.484
LOC104245731
Uncharacterized protein LOC104245731.
  
     0.476
LOC104228610
Uncharacterized protein LOC104228610.
  
     0.474
LOC104250040
Uncharacterized protein LOC104250040.
  
     0.473
LOC104229469
Uncharacterized protein LOC104229469.
  
     0.472
LOC104235248
Chloroplastic group IIA intron splicing facilitator CRS1, chloroplastic isoform X1.
  
     0.471
LOC104240905
Uncharacterized protein LOC104240905.
  
     0.467
LOC104227692
CASP-like protein; Belongs to the Casparian strip membrane proteins (CASP) family.
  
     0.461
Your Current Organism:
Nicotiana sylvestris
NCBI taxonomy Id: 4096
Other names: N. sylvestris, Nicotiana sylvestris Speg. & Comes, wood tobacco
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.