LOC104214449 protein (Nicotiana sylvestris) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

LOC104214449

Uncharacterized protein LOC104214449 isoform X1. (1190 aa)

Predicted Functional Partners:

LOC104211912

0.797

LOC104229668

0.770

LOC104225649

0.728

LOC104227071

0.728

LOC104242111

0.728

LOC104228589

0.681

LOC104233888

0.673

LOC104232649

0.670

LOC104244747

0.670

LOC104246591

0.665

Your Current Organism:

Nicotiana sylvestris

NCBI taxonomy Id: 4096
Other names: N. sylvestris, Nicotiana sylvestris Speg. & Comes, wood tobacco

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC104211912	LOC104214449	A0A1U7VC22	A0A1U7VBQ2	Charged multivesicular body protein 7 isoform X1.	Uncharacterized protein LOC104214449 isoform X1.	0.797
LOC104211912	LOC104225649	A0A1U7VC22	A0A1U7WEX0	Charged multivesicular body protein 7 isoform X1.	Vacuolar protein sorting-associated protein 24 homolog 1-like.	0.843
LOC104211912	LOC104227071	A0A1U7VC22	A0A1U7WS47	Charged multivesicular body protein 7 isoform X1.	Vacuolar protein sorting-associated protein 24 homolog 1.	0.843
LOC104211912	LOC104242111	A0A1U7VC22	A0A1U7XWU4	Charged multivesicular body protein 7 isoform X1.	Vacuolar protein sorting-associated protein 24 homolog 1.	0.843
LOC104211912	LOC104246591	A0A1U7VC22	A0A1U7Y9D8	Charged multivesicular body protein 7 isoform X1.	Vacuolar protein sorting-associated protein 20 homolog 2-like.	0.859
LOC104214449	LOC104211912	A0A1U7VBQ2	A0A1U7VC22	Uncharacterized protein LOC104214449 isoform X1.	Charged multivesicular body protein 7 isoform X1.	0.797
LOC104214449	LOC104225649	A0A1U7VBQ2	A0A1U7WEX0	Uncharacterized protein LOC104214449 isoform X1.	Vacuolar protein sorting-associated protein 24 homolog 1-like.	0.728
LOC104214449	LOC104227071	A0A1U7VBQ2	A0A1U7WS47	Uncharacterized protein LOC104214449 isoform X1.	Vacuolar protein sorting-associated protein 24 homolog 1.	0.728
LOC104214449	LOC104228589	A0A1U7VBQ2	A0A1U7WXG1	Uncharacterized protein LOC104214449 isoform X1.	Ubiquitin thioesterase OTU1.	0.681
LOC104214449	LOC104229668	A0A1U7VBQ2	A0A1U7WL01	Uncharacterized protein LOC104214449 isoform X1.	NPL4-like protein 1.	0.770
LOC104214449	LOC104232649	A0A1U7VBQ2	A0A1U7X3E4	Uncharacterized protein LOC104214449 isoform X1.	Alpha-soluble NSF attachment protein-like.	0.670
LOC104214449	LOC104233888	A0A1U7VBQ2	A0A1U7X7I9	Uncharacterized protein LOC104214449 isoform X1.	Ataxin-3 homolog.	0.673
LOC104214449	LOC104242111	A0A1U7VBQ2	A0A1U7XWU4	Uncharacterized protein LOC104214449 isoform X1.	Vacuolar protein sorting-associated protein 24 homolog 1.	0.728
LOC104214449	LOC104244747	A0A1U7VBQ2	A0A1U7Y9B4	Uncharacterized protein LOC104214449 isoform X1.	Alpha-soluble NSF attachment protein.	0.670
LOC104214449	LOC104246591	A0A1U7VBQ2	A0A1U7Y9D8	Uncharacterized protein LOC104214449 isoform X1.	Vacuolar protein sorting-associated protein 20 homolog 2-like.	0.665
LOC104225649	LOC104211912	A0A1U7WEX0	A0A1U7VC22	Vacuolar protein sorting-associated protein 24 homolog 1-like.	Charged multivesicular body protein 7 isoform X1.	0.843
LOC104225649	LOC104214449	A0A1U7WEX0	A0A1U7VBQ2	Vacuolar protein sorting-associated protein 24 homolog 1-like.	Uncharacterized protein LOC104214449 isoform X1.	0.728
LOC104225649	LOC104227071	A0A1U7WEX0	A0A1U7WS47	Vacuolar protein sorting-associated protein 24 homolog 1-like.	Vacuolar protein sorting-associated protein 24 homolog 1.	0.900
LOC104225649	LOC104242111	A0A1U7WEX0	A0A1U7XWU4	Vacuolar protein sorting-associated protein 24 homolog 1-like.	Vacuolar protein sorting-associated protein 24 homolog 1.	0.900
LOC104225649	LOC104246591	A0A1U7WEX0	A0A1U7Y9D8	Vacuolar protein sorting-associated protein 24 homolog 1-like.	Vacuolar protein sorting-associated protein 20 homolog 2-like.	0.887