STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC104215744Rhodanese-like domain-containing protein 4A, chloroplastic. (355 aa)    
Predicted Functional Partners:
LOC104222878
U4/U6 small nuclear ribonucleoprotein Prp31-like.
      
 0.639
LOC104233749
U4/U6 small nuclear ribonucleoprotein Prp31 isoform X2.
      
 0.639
LOC104249209
Uncharacterized protein LOC104249209.
      
 0.639
LOC104227109
Isoflavone reductase-like protein.
      
 0.552
LOC104248897
Fasciclin-like arabinogalactan protein 4.
  
 
   0.499
LOC104229678
Uncharacterized protein LOC104229678.
  
     0.497
LOC104234799
Uncharacterized protein LOC104234799.
  
     0.493
LOC104227298
Fasciclin-like arabinogalactan protein 4.
  
 
   0.488
LOC104212319
Uncharacterized protein LOC104212319.
  
     0.486
LOC104226377
Uncharacterized protein LOC104226377 isoform X1.
  
     0.475
Your Current Organism:
Nicotiana sylvestris
NCBI taxonomy Id: 4096
Other names: N. sylvestris, Nicotiana sylvestris Speg. & Comes, wood tobacco
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