STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC104211948Probable isoleucine--tRNA ligase, cytoplasmic; Belongs to the class-I aminoacyl-tRNA synthetase family. (1182 aa)    
Predicted Functional Partners:
LOC104228703
Probable methionine--tRNA ligase; Belongs to the class-I aminoacyl-tRNA synthetase family.
  
 0.999
LOC104234851
Probable methionine--tRNA ligase.
  
 0.999
LOC104243638
Probable methionine--tRNA ligase; Belongs to the class-I aminoacyl-tRNA synthetase family.
  
 0.999
LOC104232788
leucine--tRNA ligase, cytoplasmic-like; Belongs to the class-I aminoacyl-tRNA synthetase family.
  
 0.998
LOC104240944
Probable glutamate--tRNA ligase, cytoplasmic; Belongs to the class-I aminoacyl-tRNA synthetase family.
  
 0.996
LOC104244261
glutamine--tRNA ligase; Belongs to the class-I aminoacyl-tRNA synthetase family.
  
 0.989
LOC104217562
Putative leucine-rich repeat receptor-like serine/threonine-protein kinase At2g24130; Belongs to the protein kinase superfamily. Ser/Thr protein kinase family.
  
 0.967
LOC104224827
arginine--tRNA ligase, cytoplasmic-like isoform X1; Belongs to the class-I aminoacyl-tRNA synthetase family.
  
 0.967
LOC104226177
arginine--tRNA ligase, cytoplasmic-like isoform X1; Belongs to the class-I aminoacyl-tRNA synthetase family.
  
 0.967
LOC104246283
Putative leucine--tRNA ligase, mitochondrial; Belongs to the class-I aminoacyl-tRNA synthetase family.
  
0.965
Your Current Organism:
Nicotiana sylvestris
NCBI taxonomy Id: 4096
Other names: N. sylvestris, Nicotiana sylvestris Speg. & Comes, wood tobacco
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