STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC104217190Pentatricopeptide repeat-containing protein At1g63150-like. (512 aa)    
Predicted Functional Partners:
LOC104219081
Pentatricopeptide repeat-containing protein At4g02820, mitochondrial.
      
0.497
LOC104219590
125 kDa kinesin-related protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.
      
 0.480
LOC104225659
125 kDa kinesin-related protein-like; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.
      
 0.480
LOC104224542
Uncharacterized protein LOC104224542.
      
 0.403
LOC104230847
Uncharacterized protein LOC104230847.
      
 0.403
Your Current Organism:
Nicotiana sylvestris
NCBI taxonomy Id: 4096
Other names: N. sylvestris, Nicotiana sylvestris Speg. & Comes, wood tobacco
Server load: medium (62%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.