STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC104212720CASP-like protein; Belongs to the Casparian strip membrane proteins (CASP) family. (181 aa)    
Predicted Functional Partners:
LOC104237780
Uncharacterized protein LOC104237780.
  
     0.501
LOC104211350
Uncharacterized protein LOC104211350.
  
     0.496
LOC104212795
Uncharacterized protein LOC104212795.
  
     0.482
LOC104246278
Uncharacterized protein LOC104246278.
  
     0.482
LOC104235257
Uncharacterized protein LOC104235257.
  
     0.474
LOC104236237
Protein TIFY 6B-like isoform X1.
  
     0.474
LOC104236828
Auxin-responsive protein; Aux/IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations.
  
     0.473
LOC104212128
Transcription repressor OFP12-like.
  
     0.472
LOC104239945
Scarecrow-like protein 32; Belongs to the GRAS family.
  
     0.463
LOC104224529
Filament-like plant protein isoform X1.
  
     0.462
Your Current Organism:
Nicotiana sylvestris
NCBI taxonomy Id: 4096
Other names: N. sylvestris, Nicotiana sylvestris Speg. & Comes, wood tobacco
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.