STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC1042127563-dehydrosphinganine reductase TSC10A-like. (181 aa)    
Predicted Functional Partners:
LOC104213613
Long chain base biosynthesis protein 2a.
     
 0.980
LOC104210236
Long chain base biosynthesis protein 1-like.
     
 0.970
LOC104247438
Long chain base biosynthesis protein 1-like.
     
 0.970
LOC104239972
Sphingosine kinase 1-like isoform X1.
     
 0.939
LOC104241636
Sphingosine kinase 1 isoform X1.
     
 0.939
LOC104227397
Alkaline ceramidase 3-like.
     
 0.925
LOC104242627
Alkaline ceramidase 3-like.
     
 0.925
LOC104214576
Neutral ceramidase.
     
 0.914
LOC104231273
Neutral ceramidase.
     
 0.914
LOC104214898
LOW QUALITY PROTEIN: sphingolipid delta(4)-desaturase DES1-like.
   
 
 0.766
Your Current Organism:
Nicotiana sylvestris
NCBI taxonomy Id: 4096
Other names: N. sylvestris, Nicotiana sylvestris Speg. & Comes, wood tobacco
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.