STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC104219312Zinc finger protein 4-like. (249 aa)    
Predicted Functional Partners:
LOC104218910
QWRF motif-containing protein 3.
  
     0.523
LOC104249272
Uncharacterized protein LOC104249272.
  
     0.507
LOC104250121
Zinc finger protein ZAT9-like.
  
   
 0.500
LOC104246979
Uncharacterized protein LOC104246979.
  
     0.496
LOC104236237
Protein TIFY 6B-like isoform X1.
  
     0.495
LOC104250035
Uncharacterized protein LOC104250035.
  
   
 0.494
LOC104243919
WPP domain-interacting protein 2.
  
     0.486
LOC104226390
WPP domain-interacting protein 1.
  
     0.485
LOC104212495
HMA domain-containing protein.
  
     0.473
LOC104224360
Uncharacterized protein LOC104224360.
  
     0.473
Your Current Organism:
Nicotiana sylvestris
NCBI taxonomy Id: 4096
Other names: N. sylvestris, Nicotiana sylvestris Speg. & Comes, wood tobacco
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