STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC104216222Transcription factor FAMA-like. (280 aa)    
Predicted Functional Partners:
LOC104220169
EPIDERMAL PATTERNING FACTOR-like protein 4.
  
   
 0.569
LOC104236696
Polygalacturonase.
  
   
 0.563
LOC104245127
Flowering-promoting factor 1-like.
  
     0.526
LOC104248157
Uncharacterized protein LOC104248157.
  
     0.525
LOC104225291
Flowering-promoting factor 1-like.
  
     0.522
LOC104246080
Protein CUP-SHAPED COTYLEDON 2.
  
     0.516
LOC104241288
Uncharacterized protein LOC104241288.
  
     0.515
LOC104221326
Auxin-induced protein 15A-like.
  
     0.512
LOC104214089
EPIDERMAL PATTERNING FACTOR-like protein 5.
  
   
 0.510
LOC104229635
Flowering-promoting factor 1-like protein 3.
  
     0.510
Your Current Organism:
Nicotiana sylvestris
NCBI taxonomy Id: 4096
Other names: N. sylvestris, Nicotiana sylvestris Speg. & Comes, wood tobacco
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.