STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC104216412Deoxyribodipyrimidine photo-lyase. (488 aa)    
Predicted Functional Partners:
LOC104241243
Protein timeless homolog isoform X1.
    
 0.797
LOC104215867
(6-4)DNA photolyase isoform X1.
      
 0.605
LOC104216797
Cryptochrome-1.
      
 0.499
LOC104221306
Blue-light photoreceptor PHR2.
      
 0.499
cry1
Cryptochrome-1-like isoform X1.
      
 0.499
LOC104242551
DNA excision repair protein ERCC-1.
      
 0.497
LOC104218938
Uncharacterized protein LOC104218938 isoform X1.
      
 0.470
LOC104225304
Uncharacterized protein LOC104225304.
  
  
 0.447
LOC104230715
Translocator protein homolog.
  
  
 0.447
LOC104234116
Uncharacterized protein LOC104234116.
  
  
 0.447
Your Current Organism:
Nicotiana sylvestris
NCBI taxonomy Id: 4096
Other names: N. sylvestris, Nicotiana sylvestris Speg. & Comes, wood tobacco
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.