STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC10422378960S ribosomal protein L13; Belongs to the eukaryotic ribosomal protein eL13 family. (206 aa)    
Predicted Functional Partners:
LOC104244315
60S ribosomal protein L39-3.
   
 0.976
LOC104217092
60S ribosomal protein L12; Belongs to the universal ribosomal protein uL11 family.
   
 0.966
LOC104211183
60S ribosomal protein L27a-3-like; Belongs to the universal ribosomal protein uL15 family.
   
 0.961
LOC104222614
60S ribosomal protein L27a-3; Belongs to the universal ribosomal protein uL15 family.
   
 0.961
LOC104222608
60S ribosomal protein L6-like isoform X1.
   
 0.960
LOC104225075
60S ribosomal protein L6-like.
   
 0.960
LOC104218989
60S ribosomal protein L5.
   
 0.959
LOC104224653
60S ribosomal protein L5-like.
   
 0.959
LOC104237196
60S ribosomal protein L29; Belongs to the eukaryotic ribosomal protein eL29 family.
   
 0.959
LOC104246153
60S ribosomal protein L29; Belongs to the eukaryotic ribosomal protein eL29 family.
   
 0.959
Your Current Organism:
Nicotiana sylvestris
NCBI taxonomy Id: 4096
Other names: N. sylvestris, Nicotiana sylvestris Speg. & Comes, wood tobacco
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.