STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC104220188Uncharacterized protein LOC104220188. (336 aa)    
Predicted Functional Partners:
LOC104236301
Uncharacterized protein LOC104236301.
  
     0.531
LOC104217720
Uncharacterized protein LOC104217720.
  
     0.530
LOC104249926
Transcription factor bHLH148-like.
  
     0.527
LOC104232887
UPF0481 protein At3g47200-like isoform X1.
  
     0.526
LOC104238424
UPF0481 protein At3g47200-like.
  
     0.518
LOC104220835
Uncharacterized protein LOC104220835.
  
     0.517
LOC104248512
Uncharacterized protein LOC104248512.
  
     0.516
LOC104227697
F-box/FBD/LRR-repeat protein At1g13570-like.
  
     0.515
LOC104246917
UPF0481 protein At3g47200-like.
  
     0.515
LOC104246094
UPF0481 protein At3g47200-like.
  
     0.511
Your Current Organism:
Nicotiana sylvestris
NCBI taxonomy Id: 4096
Other names: N. sylvestris, Nicotiana sylvestris Speg. & Comes, wood tobacco
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.