STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC104224518C-type lectin receptor-like tyrosine-protein kinase At1g52310 isoform X1. (552 aa)    
Predicted Functional Partners:
LOC104218429
Golgin subfamily A member 6-like protein 22.
    
 0.526
LOC104229176
Urease accessory protein F.
     
 0.508
LOC104210559
Probable receptor-like protein kinase At5g24010.
      
 0.497
LOC104222253
Uncharacterized protein At2g39795, mitochondrial-like.
      
 0.497
LOC104226377
Uncharacterized protein LOC104226377 isoform X1.
      
 0.497
LOC104231683
Probable diphthine synthase.
    
 
 0.497
LOC104240614
Uncharacterized protein LOC104240614.
      
 0.497
LOC104248856
Uncharacterized protein LOC104248856.
      
 0.497
LOC104228276
CCR4-NOT transcription complex subunit 10.
      
 0.495
LOC104241533
Heme-binding-like protein At3g10130, chloroplastic.
      
 0.495
Your Current Organism:
Nicotiana sylvestris
NCBI taxonomy Id: 4096
Other names: N. sylvestris, Nicotiana sylvestris Speg. & Comes, wood tobacco
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