STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC104223617Uncharacterized protein LOC104223617. (836 aa)    
Predicted Functional Partners:
LOC104210863
Histone deacetylase; Belongs to the histone deacetylase family. HD Type 1 subfamily.
    
 0.680
LOC104221156
Histone deacetylase; Belongs to the histone deacetylase family. HD Type 1 subfamily.
    
 0.680
LOC104229546
Histone deacetylase; Belongs to the histone deacetylase family. HD Type 1 subfamily.
    
 0.680
LOC104236554
Histone deacetylase; Belongs to the histone deacetylase family. HD Type 1 subfamily.
    
 0.680
LOC104223858
High mobility group B protein 10-like.
    
  0.653
LOC104230389
High mobility group B protein 15-like isoform X1.
    
  0.653
LOC104238319
Putative high mobility group B protein 11.
    
  0.653
LOC104249007
High mobility group B protein 9-like.
    
  0.653
LOC104214742
WD-40 repeat-containing protein MSI4-like.
    
 0.619
LOC104227267
WD-40 repeat-containing protein MSI1.
    
 0.619
Your Current Organism:
Nicotiana sylvestris
NCBI taxonomy Id: 4096
Other names: N. sylvestris, Nicotiana sylvestris Speg. & Comes, wood tobacco
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.