STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC104227931Uncharacterized protein LOC104227931. (305 aa)    
Predicted Functional Partners:
LOC104230693
Uncharacterized protein LOC104230693.
  
     0.528
LOC104213810
NAC domain-containing protein 100-like.
  
     0.527
LOC104211285
Uncharacterized protein LOC104211285.
  
     0.522
LOC104236726
Uncharacterized GPI-anchored protein At1g61900-like isoform X1.
  
     0.522
LOC104221542
Uncharacterized GPI-anchored protein At1g61900-like.
  
     0.517
LOC104224459
BTB/POZ domain-containing protein At5g60050.
  
     0.516
LOC104219519
NAC domain-containing protein 100-like.
  
     0.515
LOC104227277
Uncharacterized protein LOC104227277.
  
     0.514
LOC104213359
Uncharacterized protein LOC104213359.
  
     0.508
LOC104214441
Protein CUP-SHAPED COTYLEDON 1-like.
  
     0.508
Your Current Organism:
Nicotiana sylvestris
NCBI taxonomy Id: 4096
Other names: N. sylvestris, Nicotiana sylvestris Speg. & Comes, wood tobacco
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