STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC104228865Desiccation-related protein PCC13-62-like. (135 aa)    
Predicted Functional Partners:
LOC104228693
Desiccation-related protein PCC13-62-like.
 
     0.515
LOC104217359
Extradiol ring-cleavage dioxygenase.
      
 0.499
LOC104221854
Zingipain-2; Belongs to the peptidase C1 family.
      
 0.499
LOC104213435
Putative elongation of fatty acids protein DDB_G0272012.
      
 0.497
LOC104213420
Endoglucanase.
      
 0.479
LOC104236634
Endoglucanase.
      
 0.479
LOC104211899
BTB/POZ domain-containing protein At2g30600.
  
     0.448
LOC104236116
Lysine histidine transporter-like 8.
  
     0.444
LOC104237277
Pentatricopeptide repeat-containing protein At2g30100, chloroplastic isoform X1.
  
     0.438
LOC104215470
Uncharacterized protein LOC104215470.
  
     0.433
Your Current Organism:
Nicotiana sylvestris
NCBI taxonomy Id: 4096
Other names: N. sylvestris, Nicotiana sylvestris Speg. & Comes, wood tobacco
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