STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC104230259DNA cross-link repair protein SNM1. (464 aa)    
Predicted Functional Partners:
LOC104219495
Cleavage and polyadenylation specificity factor CPSF30-like isoform X1.
    
 0.987
LOC104236733
Cleavage and polyadenylation specificity factor CPSF30-like.
    
 0.987
LOC104237500
ATP-dependent DNA helicase 2 subunit KU80; Single-stranded DNA-dependent ATP-dependent helicase.
    
 0.827
LOC104228040
ATP-dependent DNA helicase 2 subunit KU70 isoform X1.
   
 0.820
LOC104247425
Cleavage stimulation factor subunit 1 isoform X1.
   
 0.789
LOC104229794
Uncharacterized protein LOC104229794 isoform X1.
    
 0.787
LOC104210401
RNA polymerase II subunit A C-terminal domain phosphatase SSU72.
   
 0.779
LOC104210037
Uncharacterized protein LOC104210037.
   
 0.768
LOC104226802
Symplekin.
   
 0.768
LOC104210191
Integrator complex subunit 3 isoform X1.
    
 0.732
Your Current Organism:
Nicotiana sylvestris
NCBI taxonomy Id: 4096
Other names: N. sylvestris, Nicotiana sylvestris Speg. & Comes, wood tobacco
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