LOC104227341 protein (Nicotiana sylvestris) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

LOC104227341

Thymidylate kinase-like. (256 aa)

Predicted Functional Partners:

LOC104226167

0.998

LOC104246758

0.998

LOC104213270

0.985

LOC104224084

0.984

LOC104248217

0.984

LOC104211008

0.960

LOC104210156

0.960

LOC104219394

0.960

LOC104227481

0.960

LOC104229262

0.960

Your Current Organism:

Nicotiana sylvestris

NCBI taxonomy Id: 4096
Other names: N. sylvestris, Nicotiana sylvestris Speg. & Comes, wood tobacco

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC104210156	LOC104211008	A0A1U7V4W7	A0A1U7UVS7	Nucleoside diphosphate kinase.	Nucleoside diphosphate kinase.	0.902
LOC104210156	LOC104219394	A0A1U7V4W7	A0A1U7VTV9	Nucleoside diphosphate kinase.	Nucleoside diphosphate kinase.	0.902
LOC104210156	LOC104226167	A0A1U7V4W7	A0A1U7WNX8	Nucleoside diphosphate kinase.	Bifunctional dihydrofolate reductase-thymidylate synthase; Bifunctional enzyme. Involved in de novo dTMP biosynthesis. Key enzyme in folate metabolism; In the C-terminal section; belongs to the thymidylate synthase family.	0.428
LOC104210156	LOC104227341	A0A1U7V4W7	A0A1U7WT67	Nucleoside diphosphate kinase.	Thymidylate kinase-like.	0.960
LOC104210156	LOC104227481	A0A1U7V4W7	A0A1U7WDI1	Nucleoside diphosphate kinase.	Nucleoside diphosphate kinase.	0.905
LOC104210156	LOC104229262	A0A1U7V4W7	A0A1U7WJQ2	Nucleoside diphosphate kinase.	Nucleoside diphosphate kinase.	0.904
LOC104210156	LOC104246758	A0A1U7V4W7	A0A1U7YQ11	Nucleoside diphosphate kinase.	Bifunctional dihydrofolate reductase-thymidylate synthase; Bifunctional enzyme. Involved in de novo dTMP biosynthesis. Key enzyme in folate metabolism; In the C-terminal section; belongs to the thymidylate synthase family.	0.428
LOC104211008	LOC104210156	A0A1U7UVS7	A0A1U7V4W7	Nucleoside diphosphate kinase.	Nucleoside diphosphate kinase.	0.902
LOC104211008	LOC104219394	A0A1U7UVS7	A0A1U7VTV9	Nucleoside diphosphate kinase.	Nucleoside diphosphate kinase.	0.901
LOC104211008	LOC104226167	A0A1U7UVS7	A0A1U7WNX8	Nucleoside diphosphate kinase.	Bifunctional dihydrofolate reductase-thymidylate synthase; Bifunctional enzyme. Involved in de novo dTMP biosynthesis. Key enzyme in folate metabolism; In the C-terminal section; belongs to the thymidylate synthase family.	0.428
LOC104211008	LOC104227341	A0A1U7UVS7	A0A1U7WT67	Nucleoside diphosphate kinase.	Thymidylate kinase-like.	0.960
LOC104211008	LOC104227481	A0A1U7UVS7	A0A1U7WDI1	Nucleoside diphosphate kinase.	Nucleoside diphosphate kinase.	0.904
LOC104211008	LOC104229262	A0A1U7UVS7	A0A1U7WJQ2	Nucleoside diphosphate kinase.	Nucleoside diphosphate kinase.	0.904
LOC104211008	LOC104246758	A0A1U7UVS7	A0A1U7YQ11	Nucleoside diphosphate kinase.	Bifunctional dihydrofolate reductase-thymidylate synthase; Bifunctional enzyme. Involved in de novo dTMP biosynthesis. Key enzyme in folate metabolism; In the C-terminal section; belongs to the thymidylate synthase family.	0.428
LOC104213270	LOC104224084	A0A1U7V3S9	A0A1U7W1N8	Deoxycytidylate deaminase.	Thymidine kinase.	0.986
LOC104213270	LOC104226167	A0A1U7V3S9	A0A1U7WNX8	Deoxycytidylate deaminase.	Bifunctional dihydrofolate reductase-thymidylate synthase; Bifunctional enzyme. Involved in de novo dTMP biosynthesis. Key enzyme in folate metabolism; In the C-terminal section; belongs to the thymidylate synthase family.	0.997
LOC104213270	LOC104227341	A0A1U7V3S9	A0A1U7WT67	Deoxycytidylate deaminase.	Thymidylate kinase-like.	0.985
LOC104213270	LOC104246758	A0A1U7V3S9	A0A1U7YQ11	Deoxycytidylate deaminase.	Bifunctional dihydrofolate reductase-thymidylate synthase; Bifunctional enzyme. Involved in de novo dTMP biosynthesis. Key enzyme in folate metabolism; In the C-terminal section; belongs to the thymidylate synthase family.	0.997
LOC104213270	LOC104248217	A0A1U7V3S9	A0A1U7YU44	Deoxycytidylate deaminase.	Thymidine kinase.	0.986
LOC104219394	LOC104210156	A0A1U7VTV9	A0A1U7V4W7	Nucleoside diphosphate kinase.	Nucleoside diphosphate kinase.	0.902