STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC104227648Pentatricopeptide repeat-containing protein At4g35850, mitochondrial. (447 aa)    
Predicted Functional Partners:
LOC104241179
Pentatricopeptide repeat-containing protein At1g26460, mitochondrial.
   
   0.723
LOC104216117
LOW QUALITY PROTEIN: uncharacterized protein LOC104216117.
      
 0.579
LOC104224171
Pentatricopeptide repeat-containing protein At1g02150.
      
 0.499
LOC104239382
Afadin- and alpha-actinin-binding protein-like.
      
 0.499
LOC104244894
Uncharacterized protein LOC104244894.
      
 0.499
LOC104247416
Selenoprotein O-like.
      
 0.499
LOC104248045
Selenoprotein O-like.
      
 0.499
LOC104248719
Pentatricopeptide repeat-containing protein At1g80270, mitochondrial-like.
   
  
 0.464
LOC104233600
Ribosomal protein; Belongs to the bacterial ribosomal protein bL36 family.
    
 
 0.457
LOC104217666
Ras-related protein RABB1b.
   
  
 0.454
Your Current Organism:
Nicotiana sylvestris
NCBI taxonomy Id: 4096
Other names: N. sylvestris, Nicotiana sylvestris Speg. & Comes, wood tobacco
Server load: low (20%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.