LOC104231414 protein (Nicotiana sylvestris) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

LOC104231414

Uncharacterized protein LOC104231414. (308 aa)

Predicted Functional Partners:

LOC104226167

0.914

LOC104246758

0.914

LOC104242507

0.907

LOC104244504

0.907

LOC104216583

0.902

LOC104242718

0.902

LOC104237876

0.901

LOC104243116

0.901

LOC104212996

0.900

LOC104213270

0.900

Your Current Organism:

Nicotiana sylvestris

NCBI taxonomy Id: 4096
Other names: N. sylvestris, Nicotiana sylvestris Speg. & Comes, wood tobacco

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC104212996	LOC104226167	A0A1U7UXA6	A0A1U7WNX8	Nicotinate phosphoribosyltransferase; Catalyzes the first step in the biosynthesis of NAD from nicotinic acid, the ATP-dependent synthesis of beta-nicotinate D- ribonucleotide from nicotinate and 5-phospho-D-ribose 1-phosphate. Belongs to the NAPRTase family.	Bifunctional dihydrofolate reductase-thymidylate synthase; Bifunctional enzyme. Involved in de novo dTMP biosynthesis. Key enzyme in folate metabolism; In the C-terminal section; belongs to the thymidylate synthase family.	0.746
LOC104212996	LOC104231414	A0A1U7UXA6	A0A1U7WVT2	Nicotinate phosphoribosyltransferase; Catalyzes the first step in the biosynthesis of NAD from nicotinic acid, the ATP-dependent synthesis of beta-nicotinate D- ribonucleotide from nicotinate and 5-phospho-D-ribose 1-phosphate. Belongs to the NAPRTase family.	Uncharacterized protein LOC104231414.	0.900
LOC104212996	LOC104237876	A0A1U7UXA6	A0A1U7XLB8	Nicotinate phosphoribosyltransferase; Catalyzes the first step in the biosynthesis of NAD from nicotinic acid, the ATP-dependent synthesis of beta-nicotinate D- ribonucleotide from nicotinate and 5-phospho-D-ribose 1-phosphate. Belongs to the NAPRTase family.	Uncharacterized protein LOC104237876.	0.900
LOC104212996	LOC104242507	A0A1U7UXA6	A0A1U7Y1P8	Nicotinate phosphoribosyltransferase; Catalyzes the first step in the biosynthesis of NAD from nicotinic acid, the ATP-dependent synthesis of beta-nicotinate D- ribonucleotide from nicotinate and 5-phospho-D-ribose 1-phosphate. Belongs to the NAPRTase family.	Uncharacterized protein LOC104242507.	0.900
LOC104212996	LOC104243116	A0A1U7UXA6	A0A1U7XX64	Nicotinate phosphoribosyltransferase; Catalyzes the first step in the biosynthesis of NAD from nicotinic acid, the ATP-dependent synthesis of beta-nicotinate D- ribonucleotide from nicotinate and 5-phospho-D-ribose 1-phosphate. Belongs to the NAPRTase family.	Probable uridine nucleosidase 1.	0.909
LOC104212996	LOC104244504	A0A1U7UXA6	A0A1U7Y8I5	Nicotinate phosphoribosyltransferase; Catalyzes the first step in the biosynthesis of NAD from nicotinic acid, the ATP-dependent synthesis of beta-nicotinate D- ribonucleotide from nicotinate and 5-phospho-D-ribose 1-phosphate. Belongs to the NAPRTase family.	Uncharacterized protein LOC104244504.	0.900
LOC104212996	LOC104246758	A0A1U7UXA6	A0A1U7YQ11	Nicotinate phosphoribosyltransferase; Catalyzes the first step in the biosynthesis of NAD from nicotinic acid, the ATP-dependent synthesis of beta-nicotinate D- ribonucleotide from nicotinate and 5-phospho-D-ribose 1-phosphate. Belongs to the NAPRTase family.	Bifunctional dihydrofolate reductase-thymidylate synthase; Bifunctional enzyme. Involved in de novo dTMP biosynthesis. Key enzyme in folate metabolism; In the C-terminal section; belongs to the thymidylate synthase family.	0.746
LOC104213270	LOC104226167	A0A1U7V3S9	A0A1U7WNX8	Deoxycytidylate deaminase.	Bifunctional dihydrofolate reductase-thymidylate synthase; Bifunctional enzyme. Involved in de novo dTMP biosynthesis. Key enzyme in folate metabolism; In the C-terminal section; belongs to the thymidylate synthase family.	0.997
LOC104213270	LOC104231414	A0A1U7V3S9	A0A1U7WVT2	Deoxycytidylate deaminase.	Uncharacterized protein LOC104231414.	0.900
LOC104213270	LOC104237876	A0A1U7V3S9	A0A1U7XLB8	Deoxycytidylate deaminase.	Uncharacterized protein LOC104237876.	0.900
LOC104213270	LOC104242507	A0A1U7V3S9	A0A1U7Y1P8	Deoxycytidylate deaminase.	Uncharacterized protein LOC104242507.	0.900
LOC104213270	LOC104242718	A0A1U7V3S9	A0A1U7XVR7	Deoxycytidylate deaminase.	Uracil phosphoribosyltransferase.	0.560
LOC104213270	LOC104244504	A0A1U7V3S9	A0A1U7Y8I5	Deoxycytidylate deaminase.	Uncharacterized protein LOC104244504.	0.900
LOC104213270	LOC104246758	A0A1U7V3S9	A0A1U7YQ11	Deoxycytidylate deaminase.	Bifunctional dihydrofolate reductase-thymidylate synthase; Bifunctional enzyme. Involved in de novo dTMP biosynthesis. Key enzyme in folate metabolism; In the C-terminal section; belongs to the thymidylate synthase family.	0.997
LOC104216583	LOC104226167	A0A1U7VAA8	A0A1U7WNX8	Hypoxanthine-guanine phosphoribosyltransferase.	Bifunctional dihydrofolate reductase-thymidylate synthase; Bifunctional enzyme. Involved in de novo dTMP biosynthesis. Key enzyme in folate metabolism; In the C-terminal section; belongs to the thymidylate synthase family.	0.704
LOC104216583	LOC104231414	A0A1U7VAA8	A0A1U7WVT2	Hypoxanthine-guanine phosphoribosyltransferase.	Uncharacterized protein LOC104231414.	0.902
LOC104216583	LOC104237876	A0A1U7VAA8	A0A1U7XLB8	Hypoxanthine-guanine phosphoribosyltransferase.	Uncharacterized protein LOC104237876.	0.902
LOC104216583	LOC104242507	A0A1U7VAA8	A0A1U7Y1P8	Hypoxanthine-guanine phosphoribosyltransferase.	Uncharacterized protein LOC104242507.	0.924
LOC104216583	LOC104243116	A0A1U7VAA8	A0A1U7XX64	Hypoxanthine-guanine phosphoribosyltransferase.	Probable uridine nucleosidase 1.	0.745
LOC104216583	LOC104244504	A0A1U7VAA8	A0A1U7Y8I5	Hypoxanthine-guanine phosphoribosyltransferase.	Uncharacterized protein LOC104244504.	0.924