STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC104230604RING-type E3 ubiquitin transferase. (450 aa)    
Predicted Functional Partners:
LOC104241137
E3 ubiquitin-protein ligase UPL4 isoform X1.
      
 0.442
LOC104224638
Cysteine-rich receptor-like protein kinase 19.
  
     0.421
LOC104214719
Non-specific lipid-transfer protein 1-like; Belongs to the plant LTP family.
  
     0.418
LOC104230304
Uncharacterized protein LOC104230304.
      
 0.416
LOC104216286
E3 ubiquitin-protein ligase UPL3-like.
      
 0.414
LOC104222160
E3 ubiquitin-protein ligase UPL3-like.
      
 0.414
LOC104234422
E3 ubiquitin-protein ligase UPL3-like.
      
 0.414
LOC104238089
Basic 7S globulin-like.
  
     0.413
LOC104212073
Uncharacterized protein LOC104212073.
  
     0.411
LOC104233280
Uncharacterized protein LOC104233280.
  
    0.411
Your Current Organism:
Nicotiana sylvestris
NCBI taxonomy Id: 4096
Other names: N. sylvestris, Nicotiana sylvestris Speg. & Comes, wood tobacco
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