STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC104233311Protein argonaute 4-like; Belongs to the argonaute family. (906 aa)    
Predicted Functional Partners:
LOC104248340
DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
 0.835
LOC104232890
Translin.
   
 0.624
LOC104227233
Endoribonuclease Dicer homolog 3a; Belongs to the helicase family. Dicer subfamily.
   
 0.620
LOC104227696
Translin-associated protein X isoform X1.
    
 0.613
LOC104242680
Probable importin-7 homolog.
    
 0.613
LOC104232418
LOW QUALITY PROTEIN: endoribonuclease Dicer homolog 2-like; Belongs to the helicase family. Dicer subfamily.
   
 0.604
LOC104217395
Dicer-like protein 4 isoform X1; Belongs to the helicase family. Dicer subfamily.
   
 0.581
LOC104241536
Endoribonuclease Dicer homolog 1.
   
 0.568
LOC104244135
Endoribonuclease Dicer homolog 1-like.
   
 0.568
LOC104224027
Ribonuclease 3-like protein 1 isoform X1.
   
 0.562
Your Current Organism:
Nicotiana sylvestris
NCBI taxonomy Id: 4096
Other names: N. sylvestris, Nicotiana sylvestris Speg. & Comes, wood tobacco
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