STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC104236071traB domain-containing protein. (384 aa)    
Predicted Functional Partners:
LOC104229177
Molybdenum cofactor sulfurase-like.
      
 0.499
LOC104240348
Protein N-terminal glutamine amidohydrolase.
      
 0.499
LOC104246351
Uncharacterized protein LOC104246351.
      
 0.499
LOC104249093
Uncharacterized protein LOC104249093.
      
 0.497
LOC104248843
Transcription initiation factor IIA subunit 2; TFIIA is a component of the transcription machinery of RNA polymerase II and plays an important role in transcriptional activation; Belongs to the TFIIA subunit 2 family.
      
 0.471
LOC104220524
Protein transport protein Sec61 subunit alpha-like; Belongs to the SecY/SEC61-alpha family.
    
   0.432
LOC104223491
SURF1-like protein; Probably involved in the biogenesis of the COX complex. Belongs to the SURF1 family.
    
   0.432
LOC104221045
Lipid transfer-like protein VAS.
    
   0.432
LOC104247866
Protein transport protein Sec61 subunit alpha; Belongs to the SecY/SEC61-alpha family.
    
   0.432
Your Current Organism:
Nicotiana sylvestris
NCBI taxonomy Id: 4096
Other names: N. sylvestris, Nicotiana sylvestris Speg. & Comes, wood tobacco
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.