STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC104231973Probable prolyl 4-hydroxylase 9. (292 aa)    
Predicted Functional Partners:
LOC104216368
Proline iminopeptidase.
     
  0.900
LOC104223920
Pyrroline-5-carboxylate reductase; Belongs to the pyrroline-5-carboxylate reductase family.
     
  0.900
LOC104216444
Proline dehydrogenase; Converts proline to delta-1-pyrroline-5-carboxylate.
     
 0.697
LOC104241295
Proline dehydrogenase; Converts proline to delta-1-pyrroline-5-carboxylate.
     
 0.697
LOC104219645
Anthranilate phosphoribosyltransferase, chloroplastic-like isoform X1.
      
 0.620
LOC104214518
Anthranilate phosphoribosyltransferase, chloroplastic-like isoform X1.
      
 0.569
LOC104226216
LOW QUALITY PROTEIN: anthranilate phosphoribosyltransferase, chloroplastic-like.
      
 0.569
LOC104235710
Anthranilate phosphoribosyltransferase, chloroplastic-like isoform X1.
      
 0.569
LOC104229361
Alpha-(1,4)-fucosyltransferase.
      
 0.557
LOC104218426
Oleosin 1.
      
 0.555
Your Current Organism:
Nicotiana sylvestris
NCBI taxonomy Id: 4096
Other names: N. sylvestris, Nicotiana sylvestris Speg. & Comes, wood tobacco
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.