STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC104235248Chloroplastic group IIA intron splicing facilitator CRS1, chloroplastic isoform X1. (796 aa)    
Predicted Functional Partners:
LOC104244957
CRS2-associated factor 2, chloroplastic.
 
 
 
0.641
LOC104243258
CRS2-associated factor 1, chloroplastic isoform X1.
 
 
 
 0.605
LOC104217928
Uncharacterized protein LOC104217928 isoform X1.
  
   
 0.594
LOC104221608
Uncharacterized protein LOC104221608.
    
 
 0.592
LOC104227200
Uncharacterized protein LOC104227200.
      
 0.574
LOC104221029
mRNA-decapping enzyme subunit 2.
     
 0.564
LOC104239270
CRS2-associated factor 1, mitochondrial isoform X1.
 
   
0.556
LOC104210004
Protein ROOT PRIMORDIUM DEFECTIVE 1.
    
 
 0.515
LOC104246829
SF1-HH domain-containing protein.
    
 
 0.502
LOC104211586
Uncharacterized protein LOC104211586.
      
 0.499
Your Current Organism:
Nicotiana sylvestris
NCBI taxonomy Id: 4096
Other names: N. sylvestris, Nicotiana sylvestris Speg. & Comes, wood tobacco
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.