STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC104234889Tropomyosin, muscle isoform X1. (277 aa)    
Predicted Functional Partners:
LOC104224499
Uncharacterized protein LOC104224499.
  
     0.523
LOC104241815
Uncharacterized protein LOC104241815.
  
     0.521
LOC104219044
Uncharacterized protein LOC104219044.
  
     0.520
LOC104237077
Uncharacterized protein LOC104237077.
  
     0.518
LOC104233721
Uncharacterized protein LOC104233721.
  
     0.508
LOC104236240
Uncharacterized protein LOC104236240 isoform X1.
  
     0.506
LOC104213814
Uncharacterized protein LOC104213814.
  
     0.501
LOC104245559
Uncharacterized protein LOC104245559.
  
     0.500
LOC104244899
Uncharacterized protein LOC104244899.
  
     0.496
LOC104222566
Uncharacterized protein LOC104222566.
  
     0.495
Your Current Organism:
Nicotiana sylvestris
NCBI taxonomy Id: 4096
Other names: N. sylvestris, Nicotiana sylvestris Speg. & Comes, wood tobacco
Server load: low (30%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.