STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC104234846Cell division cycle protein 48 homolog. (805 aa)    
Predicted Functional Partners:
LOC104229668
NPL4-like protein 1.
   
 0.990
LOC104234838
UBA and UBX domain-containing protein At4g15410-like.
   
 0.896
LOC104235458
UBA and UBX domain-containing protein At4g15410-like.
   
 0.896
LOC104236146
UBA and UBX domain-containing protein At4g15410-like.
   
 0.896
LOC104246040
UBA and UBX domain-containing protein At4g15410-like.
   
 0.896
LOC104228589
Ubiquitin thioesterase OTU1.
   
 0.895
LOC104230826
Endoplasmic reticulum lectin 1 isoform X1.
    
 0.861
LOC104233888
Ataxin-3 homolog.
   
 0.852
LOC104239968
UBX domain-containing protein 6.
    
 0.811
LOC104245268
Stress response protein NST1.
    
 0.811
Your Current Organism:
Nicotiana sylvestris
NCBI taxonomy Id: 4096
Other names: N. sylvestris, Nicotiana sylvestris Speg. & Comes, wood tobacco
Server load: low (10%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.