STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC104239884rRNA methyltransferase 1, mitochondrial. (516 aa)    
Predicted Functional Partners:
LOC104248103
Protein Iojap-related, mitochondrial.
   
 
 0.855
LOC104237771
54S ribosomal protein L51, mitochondrial isoform X1.
    
   0.782
LOC104221770
Multisubstrate pseudouridine synthase 7.
   
   0.781
LOC104211454
39S ribosomal protein L47, mitochondrial-like.
   
 
 0.776
LOC104234320
39S ribosomal protein L47, mitochondrial-like.
   
 
 0.776
LOC104216579
Uncharacterized protein LOC104216579 isoform X1.
  
  
 0.700
LOC104219584
Uncharacterized protein LOC104219584.
   
 
 0.664
LOC104246090
Probable tRNA modification GTPase MnmE isoform X1; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. TrmE GTPase family.
   
 
 0.664
LOC104248908
Uncharacterized protein LOC104248908.
   
 
 0.664
LOC104211987
methyl-CpG-binding domain-containing protein 13 isoform X1.
  
 
 0.656
Your Current Organism:
Nicotiana sylvestris
NCBI taxonomy Id: 4096
Other names: N. sylvestris, Nicotiana sylvestris Speg. & Comes, wood tobacco
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