STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC104241392Coiled-coil domain-containing protein 94 homolog. (80 aa)    
Predicted Functional Partners:
LOC104231095
pre-mRNA-splicing factor CWC25 homolog.
   
 0.965
LOC104217996
pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16.
   
 0.950
LOC104248966
pre-mRNA-splicing factor syf2.
    
 0.948
LOC104216742
LOW QUALITY PROTEIN: pre-mRNA-splicing factor CWC22 homolog.
    
 0.904
LOC104228474
LOW QUALITY PROTEIN: pre-mRNA-splicing factor CWC22 homolog.
    
 0.904
LOC104233208
WD repeat-containing protein 25.
    
 0.899
LOC104237457
pre-mRNA-processing factor 17 isoform X1.
    
 0.899
LOC104220893
Serine/arginine repetitive matrix protein 2.
   
 0.891
LOC104244587
Cell division cycle 5-like protein.
    
 
 0.878
LOC104248341
pre-mRNA-splicing factor SYF1.
    
 
 0.878
Your Current Organism:
Nicotiana sylvestris
NCBI taxonomy Id: 4096
Other names: N. sylvestris, Nicotiana sylvestris Speg. & Comes, wood tobacco
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.