STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC104242348Autophagy-related protein. (118 aa)    
Predicted Functional Partners:
LOC104215021
Uncharacterized protein LOC104215021.
   
 0.997
LOC104226493
Uncharacterized protein LOC104226493.
   
 0.997
LOC104213598
Cysteine protease.
  
 0.996
LOC104248833
Ubiquitin-like modifier-activating enzyme ATG7; E1-like activating enzyme involved in the 2 ubiquitin-like systems required for autophagy.
   
 0.993
LOC104213600
Autophagy-related protein 3.
   
 0.987
LOC104242299
Autophagy-related protein 3.
   
 0.987
LOC104249574
Serine/threonine-protein kinase ULK3; Belongs to the protein kinase superfamily.
   
 0.905
LOC104232999
Ubiquitin-like protein ATG12; Ubiquitin-like protein involved in cytoplasm to vacuole transport (Cvt) and autophagic vesicle formation. Belongs to the ATG12 family.
   
 0.849
LOC104227920
E3 ubiquitin-protein ligase PRT1.
   
 0.842
LOC104229955
Serine/threonine-protein kinase apg-1-like isoform X1.
   
 0.838
Your Current Organism:
Nicotiana sylvestris
NCBI taxonomy Id: 4096
Other names: N. sylvestris, Nicotiana sylvestris Speg. & Comes, wood tobacco
Server load: low (22%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.