STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC104239416Serine/threonine-protein phosphatase 6 regulatory ankyrin repeat subunit B-like. (298 aa)    
Predicted Functional Partners:
LOC104244194
Ankyrin repeat-containing protein At5g02620-like.
  
  
  0.520
LOC104244744
Ankyrin repeat domain-containing protein, chloroplastic-like.
  
     0.519
LOC104217014
Ankyrin repeat-containing protein At3g12360-like.
  
  
  0.516
LOC104216060
Ankyrin repeat-containing protein At3g12360-like.
  
  
  0.515
LOC104240110
Tankyrase-like.
  
  
  0.496
LOC104237745
Putative E3 ubiquitin-protein ligase XBAT31.
  
  
  0.487
LOC104249089
Putative E3 ubiquitin-protein ligase XBAT31.
  
  
  0.487
LOC104211139
Ankyrin repeat-containing protein At5g02620-like.
  
  
  0.469
LOC104236739
26S proteasome non-ATPase regulatory subunit 10-like.
  
  
  0.465
LOC104230382
Ankyrin repeat-containing protein At5g02620-like isoform X1.
  
  
  0.455
Your Current Organism:
Nicotiana sylvestris
NCBI taxonomy Id: 4096
Other names: N. sylvestris, Nicotiana sylvestris Speg. & Comes, wood tobacco
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