STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC104243167F-box/LRR-repeat protein At3g58900-like. (225 aa)    
Predicted Functional Partners:
LOC104216031
Uncharacterized protein LOC104216031 isoform X1.
  
 
   0.540
LOC104231045
Uncharacterized protein LOC104231045.
  
 
   0.529
LOC104213914
F-box/FBD/LRR-repeat protein At2g04230-like.
  
     0.512
LOC104216610
Serine/threonine-protein phosphatase 7 long form homolog.
  
     0.491
LOC104221978
Putative F-box protein At3g16210.
  
     0.491
LOC104223439
Uncharacterized protein LOC104223439.
  
     0.488
LOC104228984
Kirola-like isoform X1.
  
     0.487
LOC104218908
Serine/threonine-protein phosphatase 7 long form homolog.
  
     0.486
LOC104218475
Putative RING-H2 finger protein ATL21A.
  
 
   0.483
LOC104232741
Serine/threonine-protein phosphatase 7 long form homolog.
  
     0.483
Your Current Organism:
Nicotiana sylvestris
NCBI taxonomy Id: 4096
Other names: N. sylvestris, Nicotiana sylvestris Speg. & Comes, wood tobacco
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