LOC104243321 protein (Nicotiana sylvestris) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

LOC104243321

Elongator complex protein 2. (846 aa)

Predicted Functional Partners:

LOC104241113

0.989

LOC104216601

0.975

LOC104214451

0.964

LOC104215387

0.960

LOC104241838

0.920

LOC104230197

0.884

LOC104219775

0.860

LOC104226189

0.730

LOC104211155

0.683

LOC104221917

0.678

Your Current Organism:

Nicotiana sylvestris

NCBI taxonomy Id: 4096
Other names: N. sylvestris, Nicotiana sylvestris Speg. & Comes, wood tobacco

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC104211155	LOC104219775	A0A1U7V9H3	A0A1U7VLD8	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	WD repeat-containing protein 3.	0.884
LOC104211155	LOC104221917	A0A1U7V9H3	A0A1U7VYC3	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	Periodic tryptophan protein 2 homolog.	0.904
LOC104211155	LOC104226189	A0A1U7V9H3	A0A1U7WNZ9	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	Transducin beta-like protein 3.	0.917
LOC104211155	LOC104230197	A0A1U7V9H3	A0A1U7X2Y1	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	U3 small nucleolar RNA-associated protein 21 homolog.	0.922
LOC104211155	LOC104241113	A0A1U7V9H3	A0A1U7Y6B1	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	Elongator complex protein 1; Component of the RNA polymerase II elongator complex, a multiprotein complex associated with the RNA polymerase II (Pol II) holoenzyme, and which is involved in transcriptional elongation. Belongs to the ELP1/IKA1 family.	0.501
LOC104211155	LOC104243321	A0A1U7V9H3	A0A1U7Y0Z0	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	Elongator complex protein 2.	0.683
LOC104214451	LOC104216601	A0A1U7VJ86	A0A1U7VJ99	Elongator complex protein 3; Catalytic tRNA acetyltransferase subunit of the RNA polymerase II elongator complex, which is a component of the RNA polymerase II (Pol II) holoenzyme and is involved in transcriptional elongation.	Elongator complex protein 4.	0.970
LOC104214451	LOC104219775	A0A1U7VJ86	A0A1U7VLD8	Elongator complex protein 3; Catalytic tRNA acetyltransferase subunit of the RNA polymerase II elongator complex, which is a component of the RNA polymerase II (Pol II) holoenzyme and is involved in transcriptional elongation.	WD repeat-containing protein 3.	0.483
LOC104214451	LOC104221917	A0A1U7VJ86	A0A1U7VYC3	Elongator complex protein 3; Catalytic tRNA acetyltransferase subunit of the RNA polymerase II elongator complex, which is a component of the RNA polymerase II (Pol II) holoenzyme and is involved in transcriptional elongation.	Periodic tryptophan protein 2 homolog.	0.656
LOC104214451	LOC104226189	A0A1U7VJ86	A0A1U7WNZ9	Elongator complex protein 3; Catalytic tRNA acetyltransferase subunit of the RNA polymerase II elongator complex, which is a component of the RNA polymerase II (Pol II) holoenzyme and is involved in transcriptional elongation.	Transducin beta-like protein 3.	0.457
LOC104214451	LOC104230197	A0A1U7VJ86	A0A1U7X2Y1	Elongator complex protein 3; Catalytic tRNA acetyltransferase subunit of the RNA polymerase II elongator complex, which is a component of the RNA polymerase II (Pol II) holoenzyme and is involved in transcriptional elongation.	U3 small nucleolar RNA-associated protein 21 homolog.	0.671
LOC104214451	LOC104241113	A0A1U7VJ86	A0A1U7Y6B1	Elongator complex protein 3; Catalytic tRNA acetyltransferase subunit of the RNA polymerase II elongator complex, which is a component of the RNA polymerase II (Pol II) holoenzyme and is involved in transcriptional elongation.	Elongator complex protein 1; Component of the RNA polymerase II elongator complex, a multiprotein complex associated with the RNA polymerase II (Pol II) holoenzyme, and which is involved in transcriptional elongation. Belongs to the ELP1/IKA1 family.	0.979
LOC104214451	LOC104241838	A0A1U7VJ86	A0A1U7Y8E5	Elongator complex protein 3; Catalytic tRNA acetyltransferase subunit of the RNA polymerase II elongator complex, which is a component of the RNA polymerase II (Pol II) holoenzyme and is involved in transcriptional elongation.	Protein KTI12 homolog.	0.912
LOC104214451	LOC104243321	A0A1U7VJ86	A0A1U7Y0Z0	Elongator complex protein 3; Catalytic tRNA acetyltransferase subunit of the RNA polymerase II elongator complex, which is a component of the RNA polymerase II (Pol II) holoenzyme and is involved in transcriptional elongation.	Elongator complex protein 2.	0.964
LOC104215387	LOC104216601	A0A1U7VAT7	A0A1U7VJ99	Radical S-adenosyl methionine domain-containing protein 1, mitochondrial.	Elongator complex protein 4.	0.963
LOC104215387	LOC104219775	A0A1U7VAT7	A0A1U7VLD8	Radical S-adenosyl methionine domain-containing protein 1, mitochondrial.	WD repeat-containing protein 3.	0.483
LOC104215387	LOC104221917	A0A1U7VAT7	A0A1U7VYC3	Radical S-adenosyl methionine domain-containing protein 1, mitochondrial.	Periodic tryptophan protein 2 homolog.	0.656
LOC104215387	LOC104226189	A0A1U7VAT7	A0A1U7WNZ9	Radical S-adenosyl methionine domain-containing protein 1, mitochondrial.	Transducin beta-like protein 3.	0.457
LOC104215387	LOC104230197	A0A1U7VAT7	A0A1U7X2Y1	Radical S-adenosyl methionine domain-containing protein 1, mitochondrial.	U3 small nucleolar RNA-associated protein 21 homolog.	0.671
LOC104215387	LOC104241113	A0A1U7VAT7	A0A1U7Y6B1	Radical S-adenosyl methionine domain-containing protein 1, mitochondrial.	Elongator complex protein 1; Component of the RNA polymerase II elongator complex, a multiprotein complex associated with the RNA polymerase II (Pol II) holoenzyme, and which is involved in transcriptional elongation. Belongs to the ELP1/IKA1 family.	0.973