STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC104239492Protein EXORDIUM-like 2. (310 aa)    
Predicted Functional Partners:
LOC104215260
Uncharacterized protein LOC104215260.
  
     0.448
LOC104238644
Uncharacterized protein LOC104238644.
  
     0.431
LOC104213359
Uncharacterized protein LOC104213359.
  
 
  0.430
LOC104226744
CASP-like protein; Belongs to the Casparian strip membrane proteins (CASP) family.
  
     0.427
LOC104232364
Uncharacterized protein LOC104232364.
  
     0.421
LOC104239532
Uncharacterized membrane protein At1g16860-like.
  
     0.420
LOC104242997
CASP-like protein; Belongs to the Casparian strip membrane proteins (CASP) family.
  
     0.418
LOC104224722
Scarecrow-like protein 14; Belongs to the GRAS family.
  
     0.415
LOC104238808
CASP-like protein; Belongs to the Casparian strip membrane proteins (CASP) family.
  
     0.415
LOC104244409
Scarecrow-like protein 30; Belongs to the GRAS family.
  
     0.414
Your Current Organism:
Nicotiana sylvestris
NCBI taxonomy Id: 4096
Other names: N. sylvestris, Nicotiana sylvestris Speg. & Comes, wood tobacco
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