STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC104243384Calcium-transporting ATPase; This magnesium-dependent enzyme catalyzes the hydrolysis of ATP coupled with the transport of calcium. (1016 aa)    
Predicted Functional Partners:
LOC104218586
Calcium-dependent protein kinase 32-like.
   
 
 0.564
LOC104227226
Metacaspase-9.
    
 
 0.558
LOC104225678
Inositol oxygenase 1-like.
      
 0.554
LOC104230695
Inositol oxygenase 1-like.
      
 0.554
LOC104225656
Phospholipase A1-IIgamma-like.
      
 0.553
LOC104235758
Phospholipase A1-IIgamma-like.
      
 0.553
LOC104242313
Phospholipase A1-IIgamma-like.
      
 0.553
LOC104212776
Glutamate receptor; Glutamate-gated receptor that probably acts as non-selective cation channel; Belongs to the glutamate-gated ion channel (TC 1.A.10.1) family.
   
  
 0.479
LOC104217217
Glutamate receptor; Glutamate-gated receptor that probably acts as non-selective cation channel; Belongs to the glutamate-gated ion channel (TC 1.A.10.1) family.
   
  
 0.479
LOC104248683
Glutamate receptor; Glutamate-gated receptor that probably acts as non-selective cation channel; Belongs to the glutamate-gated ion channel (TC 1.A.10.1) family.
   
  
 0.479
Your Current Organism:
Nicotiana sylvestris
NCBI taxonomy Id: 4096
Other names: N. sylvestris, Nicotiana sylvestris Speg. & Comes, wood tobacco
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