STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC104244332Pentatricopeptide repeat-containing protein At5g66520-like. (539 aa)    
Predicted Functional Partners:
LOC104223341
Squamosa promoter-binding-like protein 1.
    
 
 0.833
LOC104243107
Squamosa promoter-binding-like protein 1.
    
 
 0.833
LOC104240228
Squamosa promoter-binding-like protein 1.
    
 
 0.833
LOC104223221
Probable receptor-like protein kinase At5g18500; Belongs to the protein kinase superfamily.
   
  
 0.598
LOC104240311
Probable receptor-like protein kinase At5g18500.
   
  
 0.598
LOC104222290
Methyltransferase-like protein 13.
      
 0.585
LOC104223621
Methyltransferase-like protein 13.
      
 0.585
LOC104211421
Methyltransferase-like protein 13.
      
 0.582
LOC104217163
Pleiotropic drug resistance protein 3; Belongs to the ABC transporter superfamily. ABCG family. PDR (TC 3.A.1.205) subfamily.
      
 0.582
LOC104241458
Pto-interacting protein 1-like; Belongs to the protein kinase superfamily.
   
  
 0.575
Your Current Organism:
Nicotiana sylvestris
NCBI taxonomy Id: 4096
Other names: N. sylvestris, Nicotiana sylvestris Speg. & Comes, wood tobacco
Server load: low (26%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.