STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC104245790Zinc finger protein CONSTANS-LIKE 5-like. (384 aa)    
Predicted Functional Partners:
LOC104235066
Nuclear transcription factor Y subunit B-3-like isoform X1.
    
   0.712
LOC104233799
Nuclear transcription factor Y subunit C-2-like.
    
 
 0.706
LOC104238445
Nuclear transcription factor Y subunit C-9-like isoform X1.
    
 
 0.706
LOC104228828
26S protease regulatory subunit 6B homolog; Belongs to the AAA ATPase family.
      
 0.683
LOC104240363
26S protease regulatory subunit 6B homolog; Belongs to the AAA ATPase family.
      
 0.683
LOC104236691
26S protease regulatory subunit 6B homolog; Belongs to the AAA ATPase family.
      
 0.683
LOC104224690
NADPH-protochlorophyllide oxidoreductase; Phototransformation of protochlorophyllide (Pchlide) to chlorophyllide (Chlide); Belongs to the short-chain dehydrogenases/reductases (SDR) family. POR subfamily.
   
 
 0.621
LOC104214947
SNF1-related protein kinase regulatory subunit beta-2-like.
    
 
 0.444
LOC104235222
Scarecrow-like protein 8; Belongs to the GRAS family.
      
 0.440
LOC104218779
Cytokinin dehydrogenase 1-like.
      
 0.438
Your Current Organism:
Nicotiana sylvestris
NCBI taxonomy Id: 4096
Other names: N. sylvestris, Nicotiana sylvestris Speg. & Comes, wood tobacco
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.