STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC104242552TRAF-type zinc finger domain-containing protein 1-like. (199 aa)    
Predicted Functional Partners:
LOC104250097
LOW QUALITY PROTEIN: myosin heavy chain, cardiac muscle isoform.
    
 0.449
LOC104213376
DNA annealing helicase and endonuclease ZRANB3.
    
 0.433
LOC104240780
Uncharacterized protein LOC104240780 isoform X1.
      
 0.429
LOC104222050
Uncharacterized protein LOC104222050.
      
 0.418
LOC104214857
Uncharacterized protein LOC104214857.
      
 0.416
LOC104227631
Uncharacterized protein LOC104227631.
    
 
 0.407
LOC104210999
Uncharacterized protein LOC104210999.
      
 0.402
Your Current Organism:
Nicotiana sylvestris
NCBI taxonomy Id: 4096
Other names: N. sylvestris, Nicotiana sylvestris Speg. & Comes, wood tobacco
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.