LOC104246047 protein (Nicotiana sylvestris) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

LOC104246047

WPP domain-interacting tail-anchored protein 2. (699 aa)

Predicted Functional Partners:

LOC104211345

0.747

LOC104213113

0.747

LOC104216514

0.747

LOC104222341

0.747

LOC104221062

0.747

LOC104222339

0.747

LOC104226160

0.747

LOC104230126

0.747

LOC104230124

0.747

LOC104237590

0.747

Your Current Organism:

Nicotiana sylvestris

NCBI taxonomy Id: 4096
Other names: N. sylvestris, Nicotiana sylvestris Speg. & Comes, wood tobacco

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC104211345	LOC104246047	A0A1U7V8U7	A0A1U7YDQ7	Uncharacterized protein LOC104211345.	WPP domain-interacting tail-anchored protein 2.	0.747
LOC104213113	LOC104246047	A0A1U7VG72	A0A1U7YDQ7	Uncharacterized protein LOC104213113.	WPP domain-interacting tail-anchored protein 2.	0.747
LOC104216514	LOC104246047	A0A1U7VSI1	A0A1U7YDQ7	Uncharacterized protein LOC104216514.	WPP domain-interacting tail-anchored protein 2.	0.747
LOC104221062	LOC104246047	A0A1U7W7W6	A0A1U7YDQ7	Serine/threonine-protein phosphatase 7 long form homolog.	WPP domain-interacting tail-anchored protein 2.	0.747
LOC104222339	LOC104246047	A0A1U7WB31	A0A1U7YDQ7	Uncharacterized protein LOC104222339.	WPP domain-interacting tail-anchored protein 2.	0.747
LOC104222341	LOC104246047	A0A1U7W3T4	A0A1U7YDQ7	Uncharacterized protein LOC104222341.	WPP domain-interacting tail-anchored protein 2.	0.747
LOC104226160	LOC104246047	A0A1U7WCI1	A0A1U7YDQ7	Uncharacterized protein LOC104226160.	WPP domain-interacting tail-anchored protein 2.	0.747
LOC104230124	LOC104246047	A0A1U7X3W2	A0A1U7YDQ7	Uncharacterized protein LOC104230124.	WPP domain-interacting tail-anchored protein 2.	0.747
LOC104230126	LOC104246047	A0A1U7WRF8	A0A1U7YDQ7	Uncharacterized protein LOC104230126.	WPP domain-interacting tail-anchored protein 2.	0.747
LOC104237590	LOC104246047	A0A1U7XDD2	A0A1U7YDQ7	Uncharacterized protein LOC104237590.	WPP domain-interacting tail-anchored protein 2.	0.747
LOC104246047	LOC104211345	A0A1U7YDQ7	A0A1U7V8U7	WPP domain-interacting tail-anchored protein 2.	Uncharacterized protein LOC104211345.	0.747
LOC104246047	LOC104213113	A0A1U7YDQ7	A0A1U7VG72	WPP domain-interacting tail-anchored protein 2.	Uncharacterized protein LOC104213113.	0.747
LOC104246047	LOC104216514	A0A1U7YDQ7	A0A1U7VSI1	WPP domain-interacting tail-anchored protein 2.	Uncharacterized protein LOC104216514.	0.747
LOC104246047	LOC104221062	A0A1U7YDQ7	A0A1U7W7W6	WPP domain-interacting tail-anchored protein 2.	Serine/threonine-protein phosphatase 7 long form homolog.	0.747
LOC104246047	LOC104222339	A0A1U7YDQ7	A0A1U7WB31	WPP domain-interacting tail-anchored protein 2.	Uncharacterized protein LOC104222339.	0.747
LOC104246047	LOC104222341	A0A1U7YDQ7	A0A1U7W3T4	WPP domain-interacting tail-anchored protein 2.	Uncharacterized protein LOC104222341.	0.747
LOC104246047	LOC104226160	A0A1U7YDQ7	A0A1U7WCI1	WPP domain-interacting tail-anchored protein 2.	Uncharacterized protein LOC104226160.	0.747
LOC104246047	LOC104230124	A0A1U7YDQ7	A0A1U7X3W2	WPP domain-interacting tail-anchored protein 2.	Uncharacterized protein LOC104230124.	0.747
LOC104246047	LOC104230126	A0A1U7YDQ7	A0A1U7WRF8	WPP domain-interacting tail-anchored protein 2.	Uncharacterized protein LOC104230126.	0.747
LOC104246047	LOC104237590	A0A1U7YDQ7	A0A1U7XDD2	WPP domain-interacting tail-anchored protein 2.	Uncharacterized protein LOC104237590.	0.747