STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC104244082Uncharacterized TPR repeat-containing protein At1g05150-like. (805 aa)    
Predicted Functional Partners:
LOC104238688
Parafibromin.
    
 0.729
LOC104246904
Anaphase-promoting complex subunit 6.
    
 0.727
LOC104228478
Anaphase-promoting complex subunit 10; Component of the anaphase promoting complex/cyclosome (APC/C), a cell cycle-regulated E3 ubiquitin-protein ligase complex that controls progression through mitosis and the G1 phase of the cell cycle.
    
 0.723
LOC104241634
Anaphase-promoting complex subunit 4 isoform X1.
    
 0.722
LOC104234834
RNA polymerase II-associated factor 1 homolog.
   
 0.721
LOC104236299
RNA polymerase-associated protein LEO1 isoform X1.
    
 0.719
LOC104227232
Anaphase-promoting complex subunit 5.
   
 0.712
LOC104212090
Anaphase-promoting complex subunit 2; Belongs to the cullin family.
    
 0.688
LOC104232264
Uncharacterized protein LOC104232264 isoform X1.
    
 0.669
LOC104249324
Chromatin structure-remodeling complex protein SYD.
    
 0.669
Your Current Organism:
Nicotiana sylvestris
NCBI taxonomy Id: 4096
Other names: N. sylvestris, Nicotiana sylvestris Speg. & Comes, wood tobacco
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.