STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC104244874Uncharacterized protein LOC104244874. (176 aa)    
Predicted Functional Partners:
LOC104224708
Probable pre-mRNA-splicing factor ATP-dependent RNA helicase.
   
 0.612
LOC104217996
pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16.
   
 0.479
LOC104236701
Crooked neck-like protein 1.
   
   0.443
LOC104248966
pre-mRNA-splicing factor syf2.
    
  0.440
LOC104242211
116 kDa U5 small nuclear ribonucleoprotein component-like.
   
 
 0.425
Your Current Organism:
Nicotiana sylvestris
NCBI taxonomy Id: 4096
Other names: N. sylvestris, Nicotiana sylvestris Speg. & Comes, wood tobacco
Server load: low (14%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.