STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC104244632GTPase-activating protein gyp7-like isoform X1. (560 aa)    
Predicted Functional Partners:
LOC104213240
Ras-related protein RABG3f.
   
 0.455
LOC104215508
Ras-related protein Rab7-like.
   
 0.455
LOC104215903
Ras-related protein Rab7 isoform X1.
   
 0.455
LOC104231597
Ras-related protein Rab7-like.
   
 0.455
LOC104246417
Ras-related protein Rab7-like.
   
 0.455
LOC104248818
Ras-related protein Rab7-like isoform X1.
   
 0.455
LOC104249964
Ras-related protein Rab7.
   
 0.455
LOC104213534
Autophagy-related protein.
   
  0.410
LOC104214507
Autophagy-related protein.
   
  0.410
LOC104211365
Autophagy-related protein.
   
  0.410
Your Current Organism:
Nicotiana sylvestris
NCBI taxonomy Id: 4096
Other names: N. sylvestris, Nicotiana sylvestris Speg. & Comes, wood tobacco
Server load: low (20%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.