STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC104248235Uncharacterized protein LOC104248235. (164 aa)    
Predicted Functional Partners:
LOC104248761
Multifunctional methyltransferase subunit TRM112-like protein At1g22270.
   
 0.654
LOC104245165
Bystin isoform X1.
   
 0.565
LOC104228267
RNA-binding protein NOB1.
   
 0.547
LOC104241346
RNA-binding protein pno1.
   
  0.540
LOC104244081
Protein LTV1 homolog isoform X1.
   
 0.534
LOC104221905
Uncharacterized protein LOC104221905.
   
  0.478
LOC104229370
pre-rRNA-processing protein TSR1 homolog.
   
  0.478
LOC104246189
NADH dehydrogenase [ubiquinone] 1 alpha subcomplex assembly factor 3-like.
    
 0.474
LOC104230794
40S ribosomal protein S24; Belongs to the eukaryotic ribosomal protein eS24 family.
   
  0.454
LOC104237075
40S ribosomal protein S24; Belongs to the eukaryotic ribosomal protein eS24 family.
   
  0.454
Your Current Organism:
Nicotiana sylvestris
NCBI taxonomy Id: 4096
Other names: N. sylvestris, Nicotiana sylvestris Speg. & Comes, wood tobacco
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