STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC104247573cinnamoyl-CoA reductase 1-like. (215 aa)    
Predicted Functional Partners:
LOC104212185
40S ribosomal protein S25; Belongs to the eukaryotic ribosomal protein eS25 family.
   
 0.846
LOC104218228
40S ribosomal protein S10-1-like.
   
 0.779
LOC104228692
40S ribosomal protein S10-like.
   
 0.779
LOC104212316
40S ribosomal protein S29.
   
 0.756
LOC104214593
40S ribosomal protein S29-like.
   
 0.756
LOC104230794
40S ribosomal protein S24; Belongs to the eukaryotic ribosomal protein eS24 family.
   
 0.741
LOC104237075
40S ribosomal protein S24; Belongs to the eukaryotic ribosomal protein eS24 family.
   
 0.741
LOC104223004
40S ribosomal protein S23; Belongs to the universal ribosomal protein uS12 family.
   
 0.739
LOC104243832
40S ribosomal protein S23-like; Belongs to the universal ribosomal protein uS12 family.
   
 0.739
LOC104217861
40S ribosomal protein S28.
   
 0.733
Your Current Organism:
Nicotiana sylvestris
NCBI taxonomy Id: 4096
Other names: N. sylvestris, Nicotiana sylvestris Speg. & Comes, wood tobacco
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.